SMN1 Diagnostic Gene Analysis Exon 7 Deletion
Label Mnemonic: | SMAD |
Epic code: | LAB7685 |
Downtime form: | Doctor/Provider Orders - Pathology Core and Specialty Care Nursery |
Commercial Mailout Laboratory
6240-8 RCP
356-8593
6240-8 RCP
356-8593
Specimen(s):
Whole Blood
Collection Medium:
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Pink top tube 6 mL (K2-EDTA) | Lavender top tube 3 mL (EDTA) |
Minimum:
Adult Minimum: 6 mL whole blood in pink top tube
Pediatric Minimum: 2-3 mL whole blood in lavender top tube
Pediatric Minimum: 2-3 mL whole blood in lavender top tube
Delivery Instructions:

Turn Around
Time:
14 days upon receipt at reference laboratory
Interpretive Data:
Several genes in the critical region of the SMA locus have been
identified. One of the genes in this region, SNM, has been shown to
be homozygously deleted in approximately 95% of the type I and type II
cases and 80% of the type III cases. Although the exact functional
role of the SNM gene in the pathogenesis of SMA is unknown, detected
of absence of both copies of the SNM can be used to confirm the SMA
diagnosis in the majority of cases. Carrier status is established by
the accurate determination of the SMN copy number. Non carriers have
normal 2 copy dosage of SMN, whereas carriers have single copy dosage
of the SMN gene. The SMN competitive PCR gene-dosage assay
identified two copies of the SMN gene, consistent with the noncarrier
state. The finding of normal dosage significantly reduces the carrier
risk to approximately 5%, which should then be entered as a
conditional probability during the Bayesian risk
calculation. It has been found that approximately 5% of the
parents with affects children have normal 2 copy dosage. It is
possible for a carrier to have normal 2 copy dosage, if both copies of
the SMN gene are on 1 chromosome and the other chromosome is
homozygously deleted. The SMN gene has also been shown to have a de-
novo mutation rate of about 2%. The dosage analysis does not test for
SMN point mutations which occur in about 5% of affected individuals.
Lastly, although DNA testing is highly accurate, diagnostic errors can
occur. It is recommended that the genetic results be conveyed through
a genetic counselor.
CPT Code:
81329