IDP

  • IDP is an gene Isoform Detection and Prediction tool
    from Second Generation Sequencing and PacBio sequencing.
    It offers very reliable gene isoform identification
    with high sensitivity
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Latest News: IDP 0.1.6 major update is released ... read more

FAQ

If you have any questions that have not been answered here, please contact us.

What is IDP?

IDP is a program written entirely in python2.6 that is able to integrate the thrid generation long reads and the second generation short reads to identify gene isoforms.

My genome does not have an extensive EST and mRNA database to build the "allref_annotation_pathfilename" file, may I use the same reference genepred file (ref_annotation_pathfilename) for this file?

Can I concatenate a long read set that has 5' and 3' primer sequences with a set that has been trimmed?

Can I use any aligner I want for my short reads?

Which corrected long read output of LSC do I use as an input for IDP?

[ IDP 0.2.4 ] What is in the folder "output_old"?

"awk" bugs?