AlignQC

  • AlignQC is a tool for assessing an alignment,
    and generating reports that are easy to share
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Latest News: AlignQC is released read more

Getting Started

Before you begin, you should see an example report to see if AlignQC outputs will be useful for you.

AlignQC_Example

These steps will help you integrate AlignQC into your quality control pipeline.

How to Cite

Weirather JL, de Cesare M, Wang Y et al. Comprehensive comparison of Pacific Biosciences and Oxford Nanopore Technologies and their applications to transcriptome analysis [version 1; referees: awaiting peer review]. F1000Research 2017, 6:100 (doi: 10.12688/f1000research.10571.1)

Latest News

02-07-2017 - AlignQC Manuscript is released on F1000research

The initial release of the manuscript awaites peer review. We hope the software will be of great use to many people.

Comprehensive comparison of Pacific Biosciences and Oxford Nanopore Technologies and their applications to transcriptome analysis [version 1; referees: awaiting peer review].
Weirather, J.L.*, de Cesare, M.*, Wang, Y.*, Piazza, P., Vittorio, S., Wang, X.J., Buck, D., Au, K.F.
F1000Research 2017, 6:100 [Manuscript]
* These authors contributed equally to this work

11-29-2016 - AlignQC version 1.2

This patch provides numerous performance improvements.

09-02-2016 - AlignQC version 1.1

This patch provides graphics update minor bug fixes and additional command line interface options.

07-08-2016 - First version of AlignQC

This is a the first release of the AlignQC software. Please let us knnow if you have any problems so we can make the software better.