The University of Iowa (UIHC)
Department of Pathology
LABORATORY SERVICES HANDBOOK


OTOF-Transmembrane Protein Otoferin (Deafness Genetic Test)
Order Code: OTOF
Epic Lab Code: LAB7328
Order Form: A-1a Miscellaneous Request or Epic Req
  Commercial "Mail-out" Laboratory
6240 RCP
356-3527
Specimen:
Whole Blood
Collection Medium:
or
Pink top tube (EDTA sprayed) Lavender top tube (EDTA)
Minimum:
Preferred Minimum:  8 mL whole blood
Absolute Minimum:  4 mL whole blood
Analytic Time:
3 months
Reference Range:
None detected
Interpretive Data:
DFNB9
The gene OTOF causes autosomal recessive nonsyndromic hearing loss at 
the DFNB9 locus, which maps to chromosome 2p23-p22.

OTOF
OTOF is a gene of 48 exons that encodes a transmembrane protein of 1230 
amino acids called otoferlin.  Otoferlin is expressed in multiple cell 
types within the cochlea.  More than 24 mutations in OTOF have been 
reported and are associated with autosomal recessive nonsyndromic 
sensorineural hearing loss.  Often, otoacoustic emissions (OAEs) are 
present while pure tone audiometry or auditory brain stem responses 
(ABRs) are grossly abnormal, features characteristic of auditory 
neuropathy.

Sensitivity is greater than 98%.
Comments:
Please print, complete and submit the Deafness Testing Requisition 
from the Molecular Otolaryngology & Renal Research Laboratory, to 
Specimen Control/Mailouts with the specimen and the Epic Requisition.
Methodology:
Screening for OTOF is performed by DHPLC and sequencing.  
Oligonucleotide primers have been designed to amplify each exon.  
Amplified samples are run on the DHPLC; abnormal elution profiles are 
sequenced to determine the specific mutation.  Exons carrying known 
SNPs are directly sequenced.
CPT Code:
83891, 83894, 83898 (x38), 83903 (x8), 83904 (x48), 83912

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Updated: 11/13/2009

Note: The information contained in this handbook is for use by personnel of University of Iowa Health Care. No other use is implied or intended.