The University of Iowa (UIHC)
Department of Pathology
LABORATORY SERVICES HANDBOOK


Calpain 3 Sequencing
Order Code: CAPN
Order Form: A-1a Molecular Pathology/Diagnostics or IPR Req
  Molecular Pathology
6004 BT GH
384-9568
Specimen
Whole Blood
Collection Medium:
Lavender top tube (EDTA)
Minimum:
Adult minimum: 3 mL whole blood in lavender top (EDTA) tube.
Children minimum: 2 mL whole blood in lavender top (EDTA) tube.

Optional specimen type: Formalin Fixed paraffin embedded tissue; Fresh 
Frozen tissue.

Testing on smaller volumes than those requested will be attempted.  
However, in some cases, small blood volumes may compromise the ability 
to perform testing.
Rejection Criteria:
Testing requires a dedicated collection tube.
Delivery Instructions:
Room temperature for up to 24 hours, then refrigerate 
the whole blood if it is necessary to be held overnight, 
or weekends, or holidays.
Specimen
Instructions:
Relevant clinical information must be submitted with specimen in order 
to provide correct interpretation of results.
Testing Schedule:
Weekly
Analytic Time:
21 days
Reference Range:
Normal
Interpretive Data:
Mutations in the calpain-3 gene (CAPN3) cause autosomal recessive 
limb-girdle muscular dystrophy type 2A (LGMD2A).  Sequence analysis of 
CAPN3 is accomplished in a tiered approach.  The first tier involves 
testing 14 CAPN3 exons which, collectively, capture 83% of reported 
mutations.  If tier 1 testing yields normal or inconclusive results the 
remaining 10 CAPN3 exons are analyzed.
Methodology:
Sequence Analysis of the coding region of the CAPN3 gene.
CPT Code:
1st tier: 83912, 83890, 83901(x7), 83904(x7); 2nd tier: 83901(x10), 
83904(x10); if paraffin block or fresh tissue is submitted, remove CPT 
code 83890 and add 83907.

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Updated: 06/06/2008

Note: The information contained in this handbook is for use by personnel of University of Iowa Health Care. No other use is implied or intended.