MADS+: discovery of differential splicing events from Affymetrix exon junction array data

Mutually exclusive exons have one of two exons retained in the isoforms, but not both.

HJAY_Plot_mx.pdf contains the graphs of alternative 3'/5' splice site exons. The red lines in the figure represent the gene expression indexes. The blue lines in the figure represent the probe intensities.

For mutually exclusive exons, up_juc, down_juc and exon_1 in the first row are upstream exon-exon junction probeset, downstream exon-exon junction probeset and exon probeset for the first exon. The up_juc, down_juc and exon_2 in the second row are for the second exon.

The numbers below up_juc, down_juc, exon_1 and exon_2 are the p values for each probeset with directions. Positive p values indicate more inclusion levels in second group of samples. Negative p values indicate less inclusion levels in second group of samples.

HJAY_excel_mx.txt contains the gene names, coordinates and p values.