Annotation files:
HJAY_all_ps_location.txt: annotations for probesets.
|
HJAY_probeset_indexID |
HJAY_probeset_ID |
HJAY_gene_ID |
Chromosome |
Strand |
Start |
Stop |
|
231286 |
JUC0100000002 |
800000 |
chr1 |
+ |
PSR010000001 |
PSR010000002 |
|
639757 |
JUC0100000003 |
800000 |
chr1 |
+ |
PSR010000002 |
PSR010000004 |
|
226890 |
PSR010000002 |
800000 |
chr1 |
+ |
2476 |
2584 |
...
HJAY_tc_annotated_location.txt: annotations for transcript clusters.
|
HJAY_gene_ID |
HJAY_cluster_ID |
Chromosome |
Strand |
Start |
End |
Ensembl_ID |
Symbol |
Gene_title |
|
800004 |
TC0100005 |
chr1 |
+ |
58954 |
59871 |
ENSG00000177693,GI:53828739 |
OR4F5 |
Olfactory receptor 4F5|Olfactory receptor, family 4, subfamily F, member 5 (OR4F5) |
|
800007 |
TC0100008 |
chr1 |
+ |
357522 |
358460 |
ENSG00000177799 |
OR4F29 |
Olfactory receptor 4F29 (Olfactory receptor OR1-1) |
...
CassetteExons: annotations for cassette exon, the inclusion or skipping of a single exon in the isoforms.
|
HJAY_gene_ID |
HJAY_cluster_ID |
Gene_symbol |
Upstream_junction_ID |
Downstream_junction_ID |
Skip_junction_ID |
Upstream_exon_ID |
Exon_ID |
Downstream_exon_ID |
|
800019 |
TC0100021 |
PLEKHN1 |
JUC0100000327 |
JUC0100000409 |
JUC0100000391 |
PSR010000086 |
PSR010000087 |
PSR010000088 |
|
800021 |
TC0100023 |
AGRN |
JUC0100000888 |
JUC0100000761 |
JUC0100000985 |
PSR010000130 |
PSR010000131 |
PSR010000132 |
...
35alterExons: annotations for 3'/5' alternative splice site, the inclusion or skipping of the extended part of the exon.
|
HJAY_gene_ID |
HJAY_cluster_ID |
Gene_symbol |
Type |
Strand |
Shorter_junction_ID |
Longer_junction_ID |
Constitutive_exon_ID |
Shorter_exon_ID |
Longer_exon_ID |
|
800005 |
TC0100006 |
--- |
2-way upstream alternative |
+ |
JUC0100000007 |
JUC0100000006 |
PSR010000016 |
PSR010000014 |
--- |
|
800017 |
TC0100019 |
SAMD11 |
2-way upstream alternative |
+ |
JUC0100000096 |
JUC0100000101 |
PSR010000051 |
PSR010000049 |
PSR010000050 |
...
MXExons: annotations for mutually exclusive exon, which has one of two exons retained in the isoforms, but not both.
|
HJAY_gene_ID |
HJAY_cluster_ID |
Gene_symbol |
Exon1_upstream_junction_ID |
Exon1_downstream_junction_ID |
Exon2_upstream_junction_ID |
Exon2_downstream_junction_ID |
Upstream_exon_ID |
Exon1_ID |
Exon2_ID |
Downstream_exon_ID |
|
800042 |
TC0100044 |
MIB2 |
JUC0100002952 |
JUC0100002990 |
JUC0100003006 |
JUC0100003025 |
PSR010000323 |
PSR010000326 |
PSR010000324 |
PSR010000327 |
|
800052 |
TC0100054 |
RER1 |
JUC0100003736 |
JUC0100003732 |
JUC0100003780 |
JUC0100003783 |
PSR010000431 |
PSR010000435 |
PSR010000433 |
PSR010000437 |
...