MADS+: discovery of differential splicing events from Affymetrix exon junction array data

Cassette Exon is the inclusion or skipping of a single exon in the isoforms.

HJAY_Plot_cassette.pdf contains the graphs of alternatively spliced cassette exons. The red lines in the figure represent the gene expression indexes. The blue lines in the figure represent the probe intensities.

For cassette exons, up=upstream 'include' exon-exon junction probeset, down=downstream 'include' exon-exon junction, exon=exon probeset and skip='skip' exon-exon junction. The numbers below the names are the p values for each probeset with directions. Positive p values indicate more inclusion levels in second group of samples. Negative p values indicate less inclusion levels in second group of samples. 

HJAY_excel_cassette.txt contains the gene names, coordinates and p values.